Amira tools
- 3D viewing during segmentation
- Cutting away unwanted parts in 3D
- Digital dissecting
- Extracting separate surfaces
- From 3D landmarks to MorphoJ file
- Generate new stack of slices from a different orientation
- Miscellaneous Amira tools
- Using a stack file for histological section images
- Using histological sections for reconstructing in Amira (short manual, old version of Amira)
- Visualising colored orthoslices